This week I have begun the development of a Perl script designed to automatically calculate the local and global folding energies of RNA. I have installed and configured both CPAN and BioPerl. However, I have encountered several problems trying to incorporate the Bio::Tools::Run::PiseApplication::mfold module because it is an obsolete part of the BioPerl package so it is no longer included or supported by BioPerl. After several failed installation attempts and unsuccessful Perl scripts, I have decided to explore alternative options and am currently researching other BioPerl modules in order to create a successful script that can simulate RNA folding.
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JAY VillariUndergraduate student studying Computer Science and Biology at The College of New Jersey Archives
May 2016
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